667 lines
18 KiB
C++
667 lines
18 KiB
C++
/*
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* Licensed to Derrick R. Burns under one or more
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* contributor license agreements. See the NOTICES file distributed with
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* this work for additional information regarding copyright ownership.
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* The ASF licenses this file to You under the Apache License, Version 2.0
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* (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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#pragma once
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#include <algorithm>
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#include <cfloat>
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#include <cmath>
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#include <queue>
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#include <utility>
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#include <vector>
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#ifdef min
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#undef min
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#endif
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#ifdef max
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#undef max
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#endif
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namespace duckdb_tdigest {
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using Value = double;
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using Weight = double;
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using Index = size_t;
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const size_t kHighWater = 40000;
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const double pi = 3.14159265358979323846;
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class Centroid {
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public:
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Centroid() : Centroid(0.0, 0.0) {
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}
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Centroid(Value mean, Weight weight) : mean_(mean), weight_(weight) {
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}
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inline Value mean() const noexcept {
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return mean_;
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}
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inline Weight weight() const noexcept {
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return weight_;
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}
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inline void add(const Centroid &c) {
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// CHECK_GT(c.weight_, 0);
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if (weight_ != 0.0) {
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weight_ += c.weight_;
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mean_ += c.weight_ * (c.mean_ - mean_) / weight_;
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} else {
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weight_ = c.weight_;
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mean_ = c.mean_;
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}
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}
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private:
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Value mean_ = 0;
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Weight weight_ = 0;
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};
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struct CentroidList {
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explicit CentroidList(const std::vector<Centroid> &s) : iter(s.cbegin()), end(s.cend()) {
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}
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std::vector<Centroid>::const_iterator iter;
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std::vector<Centroid>::const_iterator end;
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bool advance() {
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return ++iter != end;
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}
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};
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class CentroidListComparator {
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public:
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CentroidListComparator() {
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}
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bool operator()(const CentroidList &left, const CentroidList &right) const {
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return left.iter->mean() > right.iter->mean();
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}
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};
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using CentroidListQueue = std::priority_queue<CentroidList, std::vector<CentroidList>, CentroidListComparator>;
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struct CentroidComparator {
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bool operator()(const Centroid &a, const Centroid &b) const {
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return a.mean() < b.mean();
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}
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};
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class TDigest {
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class TDigestComparator {
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public:
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TDigestComparator() {
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}
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bool operator()(const TDigest *left, const TDigest *right) const {
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return left->totalSize() > right->totalSize();
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}
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};
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using TDigestQueue = std::priority_queue<const TDigest *, std::vector<const TDigest *>, TDigestComparator>;
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public:
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TDigest() : TDigest(1000) {
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}
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explicit TDigest(Value compression) : TDigest(compression, 0) {
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}
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TDigest(Value compression, Index bufferSize) : TDigest(compression, bufferSize, 0) {
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}
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TDigest(Value compression, Index unmergedSize, Index mergedSize)
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: compression_(compression), maxProcessed_(processedSize(mergedSize, compression)),
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maxUnprocessed_(unprocessedSize(unmergedSize, compression)) {
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processed_.reserve(maxProcessed_);
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unprocessed_.reserve(maxUnprocessed_ + 1);
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}
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TDigest(std::vector<Centroid> &&processed, std::vector<Centroid> &&unprocessed, Value compression,
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Index unmergedSize, Index mergedSize)
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: TDigest(compression, unmergedSize, mergedSize) {
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processed_ = std::move(processed);
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unprocessed_ = std::move(unprocessed);
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processedWeight_ = weight(processed_);
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unprocessedWeight_ = weight(unprocessed_);
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if (!processed_.empty()) {
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min_ = std::min(min_, processed_[0].mean());
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max_ = std::max(max_, (processed_.cend() - 1)->mean());
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}
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updateCumulative();
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}
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static Weight weight(std::vector<Centroid> ¢roids) noexcept {
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Weight w = 0.0;
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for (auto centroid : centroids) {
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w += centroid.weight();
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}
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return w;
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}
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TDigest &operator=(TDigest &&o) {
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compression_ = o.compression_;
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maxProcessed_ = o.maxProcessed_;
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maxUnprocessed_ = o.maxUnprocessed_;
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processedWeight_ = o.processedWeight_;
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unprocessedWeight_ = o.unprocessedWeight_;
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processed_ = std::move(o.processed_);
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unprocessed_ = std::move(o.unprocessed_);
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cumulative_ = std::move(o.cumulative_);
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min_ = o.min_;
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max_ = o.max_;
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return *this;
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}
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TDigest(TDigest &&o)
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: TDigest(std::move(o.processed_), std::move(o.unprocessed_), o.compression_, o.maxUnprocessed_,
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o.maxProcessed_) {
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}
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static inline Index processedSize(Index size, Value compression) noexcept {
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return (size == 0) ? static_cast<Index>(2 * std::ceil(compression)) : size;
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}
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static inline Index unprocessedSize(Index size, Value compression) noexcept {
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return (size == 0) ? static_cast<Index>(8 * std::ceil(compression)) : size;
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}
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// merge in another t-digest
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inline void merge(const TDigest *other) {
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std::vector<const TDigest *> others {other};
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add(others.cbegin(), others.cend());
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}
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const std::vector<Centroid> &processed() const {
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return processed_;
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}
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const std::vector<Centroid> &unprocessed() const {
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return unprocessed_;
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}
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Index maxUnprocessed() const {
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return maxUnprocessed_;
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}
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Index maxProcessed() const {
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return maxProcessed_;
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}
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inline void add(std::vector<const TDigest *> digests) {
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add(digests.cbegin(), digests.cend());
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}
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// merge in a vector of tdigests in the most efficient manner possible
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// in constant space
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// works for any value of kHighWater
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void add(std::vector<const TDigest *>::const_iterator iter, std::vector<const TDigest *>::const_iterator end) {
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if (iter != end) {
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auto size = std::distance(iter, end);
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TDigestQueue pq(TDigestComparator {});
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for (; iter != end; iter++) {
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pq.push((*iter));
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}
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std::vector<const TDigest *> batch;
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batch.reserve(size_t(size));
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size_t totalSize = 0;
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while (!pq.empty()) {
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auto td = pq.top();
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batch.push_back(td);
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pq.pop();
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totalSize += td->totalSize();
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if (totalSize >= kHighWater || pq.empty()) {
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mergeProcessed(batch);
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mergeUnprocessed(batch);
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processIfNecessary();
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batch.clear();
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totalSize = 0;
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}
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}
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updateCumulative();
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}
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}
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Weight processedWeight() const {
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return processedWeight_;
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}
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Weight unprocessedWeight() const {
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return unprocessedWeight_;
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}
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bool haveUnprocessed() const {
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return unprocessed_.size() > 0;
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}
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size_t totalSize() const {
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return processed_.size() + unprocessed_.size();
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}
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long totalWeight() const {
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return static_cast<long>(processedWeight_ + unprocessedWeight_);
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}
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// return the cdf on the t-digest
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Value cdf(Value x) {
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if (haveUnprocessed() || isDirty()) {
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process();
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}
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return cdfProcessed(x);
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}
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bool isDirty() {
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return processed_.size() > maxProcessed_ || unprocessed_.size() > maxUnprocessed_;
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}
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// return the cdf on the processed values
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Value cdfProcessed(Value x) const {
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if (processed_.empty()) {
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// no data to examin_e
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return 0.0;
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} else if (processed_.size() == 1) {
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// exactly one centroid, should have max_==min_
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auto width = max_ - min_;
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if (x < min_) {
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return 0.0;
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} else if (x > max_) {
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return 1.0;
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} else if (x - min_ <= width) {
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// min_ and max_ are too close together to do any viable interpolation
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return 0.5;
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} else {
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// interpolate if somehow we have weight > 0 and max_ != min_
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return (x - min_) / (max_ - min_);
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}
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} else {
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auto n = processed_.size();
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if (x <= min_) {
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return 0;
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}
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if (x >= max_) {
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return 1;
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}
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// check for the left tail
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if (x <= mean(0)) {
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// note that this is different than mean(0) > min_ ... this guarantees interpolation works
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if (mean(0) - min_ > 0) {
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return (x - min_) / (mean(0) - min_) * weight(0) / processedWeight_ / 2.0;
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} else {
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return 0;
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}
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}
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// and the right tail
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if (x >= mean(n - 1)) {
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if (max_ - mean(n - 1) > 0) {
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return 1.0 - (max_ - x) / (max_ - mean(n - 1)) * weight(n - 1) / processedWeight_ / 2.0;
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} else {
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return 1;
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}
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}
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CentroidComparator cc;
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auto iter = std::upper_bound(processed_.cbegin(), processed_.cend(), Centroid(x, 0), cc);
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auto i = size_t(std::distance(processed_.cbegin(), iter));
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auto z1 = x - (iter - 1)->mean();
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auto z2 = (iter)->mean() - x;
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return weightedAverage(cumulative_[i - 1], z2, cumulative_[i], z1) / processedWeight_;
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}
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}
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// this returns a quantile on the t-digest
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Value quantile(Value q) {
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if (haveUnprocessed() || isDirty()) {
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process();
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}
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return quantileProcessed(q);
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}
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// this returns a quantile on the currently processed values without changing the t-digest
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// the value will not represent the unprocessed values
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Value quantileProcessed(Value q) const {
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if (q < 0 || q > 1) {
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return NAN;
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}
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if (processed_.size() == 0) {
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// no sorted means no data, no way to get a quantile
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return NAN;
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} else if (processed_.size() == 1) {
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// with one data point, all quantiles lead to Rome
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return mean(0);
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}
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// we know that there are at least two sorted now
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auto n = processed_.size();
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// if values were stored in a sorted array, index would be the offset we are Weighterested in
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const auto index = q * processedWeight_;
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// at the boundaries, we return min_ or max_
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if (index <= weight(0) / 2.0) {
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return min_ + 2.0 * index / weight(0) * (mean(0) - min_);
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}
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auto iter = std::lower_bound(cumulative_.cbegin(), cumulative_.cend(), index);
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if (iter + 1 != cumulative_.cend()) {
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auto i = size_t(std::distance(cumulative_.cbegin(), iter));
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auto z1 = index - *(iter - 1);
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auto z2 = *(iter)-index;
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// LOG(INFO) << "z2 " << z2 << " index " << index << " z1 " << z1;
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return weightedAverage(mean(i - 1), z2, mean(i), z1);
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}
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auto z1 = index - processedWeight_ - weight(n - 1) / 2.0;
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auto z2 = weight(n - 1) / 2 - z1;
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return weightedAverage(mean(n - 1), z1, max_, z2);
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}
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Value compression() const {
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return compression_;
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}
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void add(Value x) {
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add(x, 1);
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}
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inline void compress() {
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process();
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}
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// add a single centroid to the unprocessed vector, processing previously unprocessed sorted if our limit has
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// been reached.
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inline bool add(Value x, Weight w) {
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if (std::isnan(x)) {
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return false;
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}
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unprocessed_.push_back(Centroid(x, w));
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unprocessedWeight_ += w;
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processIfNecessary();
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return true;
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}
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inline void add(std::vector<Centroid>::const_iterator iter, std::vector<Centroid>::const_iterator end) {
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while (iter != end) {
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const size_t diff = size_t(std::distance(iter, end));
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const size_t room = maxUnprocessed_ - unprocessed_.size();
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auto mid = iter + int64_t(std::min(diff, room));
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while (iter != mid) {
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unprocessed_.push_back(*(iter++));
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}
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if (unprocessed_.size() >= maxUnprocessed_) {
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process();
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}
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}
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}
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private:
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Value compression_;
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Value min_ = std::numeric_limits<Value>::max();
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Value max_ = std::numeric_limits<Value>::min();
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Index maxProcessed_;
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Index maxUnprocessed_;
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Value processedWeight_ = 0.0;
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Value unprocessedWeight_ = 0.0;
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std::vector<Centroid> processed_;
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std::vector<Centroid> unprocessed_;
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std::vector<Weight> cumulative_;
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// return mean of i-th centroid
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inline Value mean(size_t i) const noexcept {
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return processed_[i].mean();
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}
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// return weight of i-th centroid
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inline Weight weight(size_t i) const noexcept {
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return processed_[i].weight();
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}
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// append all unprocessed centroids into current unprocessed vector
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void mergeUnprocessed(const std::vector<const TDigest *> &tdigests) {
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if (tdigests.size() == 0) {
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return;
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}
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size_t total = unprocessed_.size();
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for (auto &td : tdigests) {
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total += td->unprocessed_.size();
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}
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unprocessed_.reserve(total);
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for (auto &td : tdigests) {
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unprocessed_.insert(unprocessed_.end(), td->unprocessed_.cbegin(), td->unprocessed_.cend());
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unprocessedWeight_ += td->unprocessedWeight_;
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}
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}
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// merge all processed centroids together into a single sorted vector
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void mergeProcessed(const std::vector<const TDigest *> &tdigests) {
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if (tdigests.size() == 0) {
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return;
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}
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size_t total = 0;
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CentroidListQueue pq(CentroidListComparator {});
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for (auto &td : tdigests) {
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auto &sorted = td->processed_;
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auto size = sorted.size();
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if (size > 0) {
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pq.push(CentroidList(sorted));
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total += size;
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processedWeight_ += td->processedWeight_;
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}
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}
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if (total == 0) {
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return;
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}
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if (processed_.size() > 0) {
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pq.push(CentroidList(processed_));
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total += processed_.size();
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}
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std::vector<Centroid> sorted;
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sorted.reserve(total);
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while (!pq.empty()) {
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auto best = pq.top();
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pq.pop();
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sorted.push_back(*(best.iter));
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if (best.advance()) {
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pq.push(best);
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}
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}
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processed_ = std::move(sorted);
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if (processed_.size() > 0) {
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min_ = std::min(min_, processed_[0].mean());
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max_ = std::max(max_, (processed_.cend() - 1)->mean());
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}
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}
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inline void processIfNecessary() {
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if (isDirty()) {
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process();
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}
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}
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void updateCumulative() {
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const auto n = processed_.size();
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cumulative_.clear();
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cumulative_.reserve(n + 1);
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auto previous = 0.0;
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for (Index i = 0; i < n; i++) {
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auto current = weight(i);
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auto halfCurrent = current / 2.0;
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cumulative_.push_back(previous + halfCurrent);
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previous = previous + current;
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}
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cumulative_.push_back(previous);
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}
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// merges unprocessed_ centroids and processed_ centroids together and processes them
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// when complete, unprocessed_ will be empty and processed_ will have at most maxProcessed_ centroids
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inline void process() {
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CentroidComparator cc;
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std::sort(unprocessed_.begin(), unprocessed_.end(), cc);
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auto count = unprocessed_.size();
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unprocessed_.insert(unprocessed_.end(), processed_.cbegin(), processed_.cend());
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std::inplace_merge(unprocessed_.begin(), unprocessed_.begin() + int64_t(count), unprocessed_.end(), cc);
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processedWeight_ += unprocessedWeight_;
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unprocessedWeight_ = 0;
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processed_.clear();
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processed_.push_back(unprocessed_[0]);
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Weight wSoFar = unprocessed_[0].weight();
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Weight wLimit = processedWeight_ * integratedQ(1.0);
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auto end = unprocessed_.end();
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for (auto iter = unprocessed_.cbegin() + 1; iter < end; iter++) {
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auto ¢roid = *iter;
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Weight projectedW = wSoFar + centroid.weight();
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if (projectedW <= wLimit) {
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wSoFar = projectedW;
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(processed_.end() - 1)->add(centroid);
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} else {
|
|
auto k1 = integratedLocation(wSoFar / processedWeight_);
|
|
wLimit = processedWeight_ * integratedQ(k1 + 1.0);
|
|
wSoFar += centroid.weight();
|
|
processed_.emplace_back(centroid);
|
|
}
|
|
}
|
|
unprocessed_.clear();
|
|
min_ = std::min(min_, processed_[0].mean());
|
|
max_ = std::max(max_, (processed_.cend() - 1)->mean());
|
|
updateCumulative();
|
|
}
|
|
|
|
inline size_t checkWeights() {
|
|
return checkWeights(processed_, processedWeight_);
|
|
}
|
|
|
|
size_t checkWeights(const std::vector<Centroid> &sorted, Value total) {
|
|
size_t badWeight = 0;
|
|
auto k1 = 0.0;
|
|
auto q = 0.0;
|
|
for (auto iter = sorted.cbegin(); iter != sorted.cend(); iter++) {
|
|
auto w = iter->weight();
|
|
auto dq = w / total;
|
|
auto k2 = integratedLocation(q + dq);
|
|
if (k2 - k1 > 1 && w != 1) {
|
|
badWeight++;
|
|
}
|
|
if (k2 - k1 > 1.5 && w != 1) {
|
|
badWeight++;
|
|
}
|
|
q += dq;
|
|
k1 = k2;
|
|
}
|
|
|
|
return badWeight;
|
|
}
|
|
|
|
/**
|
|
* Converts a quantile into a centroid scale value. The centroid scale is nomin_ally
|
|
* the number k of the centroid that a quantile point q should belong to. Due to
|
|
* round-offs, however, we can't align things perfectly without splitting points
|
|
* and sorted. We don't want to do that, so we have to allow for offsets.
|
|
* In the end, the criterion is that any quantile range that spans a centroid
|
|
* scale range more than one should be split across more than one centroid if
|
|
* possible. This won't be possible if the quantile range refers to a single point
|
|
* or an already existing centroid.
|
|
* <p/>
|
|
* This mapping is steep near q=0 or q=1 so each centroid there will correspond to
|
|
* less q range. Near q=0.5, the mapping is flatter so that sorted there will
|
|
* represent a larger chunk of quantiles.
|
|
*
|
|
* @param q The quantile scale value to be mapped.
|
|
* @return The centroid scale value corresponding to q.
|
|
*/
|
|
inline Value integratedLocation(Value q) const {
|
|
return compression_ * (std::asin(2.0 * q - 1.0) + pi / 2) / pi;
|
|
}
|
|
|
|
inline Value integratedQ(Value k) const {
|
|
return (std::sin(std::min(k, compression_) * pi / compression_ - pi / 2) + 1) / 2;
|
|
}
|
|
|
|
/**
|
|
* Same as {@link #weightedAverageSorted(Value, Value, Value, Value)} but flips
|
|
* the order of the variables if <code>x2</code> is greater than
|
|
* <code>x1</code>.
|
|
*/
|
|
static Value weightedAverage(Value x1, Value w1, Value x2, Value w2) {
|
|
return (x1 <= x2) ? weightedAverageSorted(x1, w1, x2, w2) : weightedAverageSorted(x2, w2, x1, w1);
|
|
}
|
|
|
|
/**
|
|
* Compute the weighted average between <code>x1</code> with a weight of
|
|
* <code>w1</code> and <code>x2</code> with a weight of <code>w2</code>.
|
|
* This expects <code>x1</code> to be less than or equal to <code>x2</code>
|
|
* and is guaranteed to return a number between <code>x1</code> and
|
|
* <code>x2</code>.
|
|
*/
|
|
static Value weightedAverageSorted(Value x1, Value w1, Value x2, Value w2) {
|
|
const Value x = (x1 * w1 + x2 * w2) / (w1 + w2);
|
|
return std::max(x1, std::min(x, x2));
|
|
}
|
|
|
|
static Value interpolate(Value x, Value x0, Value x1) {
|
|
return (x - x0) / (x1 - x0);
|
|
}
|
|
|
|
/**
|
|
* Computes an interpolated value of a quantile that is between two sorted.
|
|
*
|
|
* Index is the quantile desired multiplied by the total number of samples - 1.
|
|
*
|
|
* @param index Denormalized quantile desired
|
|
* @param previousIndex The denormalized quantile corresponding to the center of the previous centroid.
|
|
* @param nextIndex The denormalized quantile corresponding to the center of the following centroid.
|
|
* @param previousMean The mean of the previous centroid.
|
|
* @param nextMean The mean of the following centroid.
|
|
* @return The interpolated mean.
|
|
*/
|
|
static Value quantile(Value index, Value previousIndex, Value nextIndex, Value previousMean, Value nextMean) {
|
|
const auto delta = nextIndex - previousIndex;
|
|
const auto previousWeight = (nextIndex - index) / delta;
|
|
const auto nextWeight = (index - previousIndex) / delta;
|
|
return previousMean * previousWeight + nextMean * nextWeight;
|
|
}
|
|
};
|
|
|
|
} // namespace tdigest
|